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Work experience

Sep 2012Sep 2015

PhD Bioinformatics

University of Nice-Sophia Antipolis, Nice France

LINE-1 retrotransposon mediated structural variations in normal and cancer genomes, and how this impacts the transcriptome of tumor cells.

Apr 2011Sep 2012

Engineer Bionformatics

French National Institute of Health - INSERM, Nice France

Whole Genome, RNA sequencing and Chip-Seq data analysis. Bioinformatics analysis pipeline development using PERL, C++, Shell, Java. System administration of bioinformatics super computing facility.

Aug 2008Feb 2011

Bioinformatics Software Developer

Synamatix Sdn Bhd, Kuala Lumpur Malaysia

Development of Bioinformatics software applications using Java, C++, PERL.

Apr 2006May 2008

Bioinformatics Analyst

Jalaja Technologies Pvt Ltd, Bangalore India

Development of Bioinformatics pipelines, Analysis of Next Generation sequencing data and PERL scripting.

Education

Sep 2012Sep 2015

PhD Bioinformatics

University of Nice-Sophia Antipolis, Nice France

LINE-1 retrotransposon mediated structural variations in normal and cancer genomes, and how this impacts the transcriptome of tumor cells.

May 2004May 2006

M.Sc Bioinformatics

University of Madras, Chennai India

Bioinformatics, programming and wet lab experiments.

Skills

System administration, DELL R920, DELL R720, Redhat RHEL 7, CentOS 6, Fedora Core 5

2 year experience in system administration of Bioinformatics core facility DELL R920 and DEL720 Server’s with Redhat and CentOS OS respectively.

Hidden Markov Models, Artificial Neural Networks

6 months experience in developing bioinformatics applications using ANN and HMM. Creating learning set and fine tuning prediction model.

RNA-Seq, Chip-Seq, Whole Genome and Exome sequencing data analysis

More than 5 years experience in performing Next generation data analysis and pipeline development.

C++, Java JSP/JSF,Swing, PERL, Shell Programming, MySQL, PHP, JSON, XML, JavaScript, R-Tool statistics

3 years of hardcore industry level software development experience using Java Swing, Java JSP and C++. PERL scripting. Full software cycle experience with more than 10000 lines of professional coding proven record. 

Bioinformatics, Molecular Biology,  Genomics 

Concept theoretical level information and also Master degree time wet-lab experience of Molecular biology experiments like SDS-page, DNA extraction, PCR etc.

Portfolio

Screen shots of my recent work euL1db.unice.fr

Publications

  1. Mir. AA,Philippe C, Cristofari G (2014) euL1db: the European database of L1HS retrotransposon insertions in humans. Nucleic Acids Res. 2015 Jan 28;43(Database!issue):D43R7. doi: 10.1093/nar/gku1043. Epub 2014 Oct!28.

  2. Monot C, Kuciak M, Viollet S, Mir AA, Gabus C, et!al. (2013) The!Specificity and Flexibility of L1 Reverse Transcription Priming at Imperfect T-Tracts. PLoS Genet 9(5): e1003499. doi:10.1371/journal.pgen.1003499.

Conferences - Talks / Posters

1- July, 2013:  Eighteenth National Congress on Transposable elements in Montpellier, France.

2- April, 2012: International Congress on Transposable Elements (ICTE) 2012 in Saint Malo, France.

3- December, 2006: International Conference on Bioinformatics – INCOB in New Delhi, India.

Teaching Experience

Additional trainings

Awards & Grants

Research

LINE-1 retrotransposon mediated structural variations in normal and cancer genomes, and how this impacts the transcriptome of tumor cells.

CONTACT


Civil status 

Sports

Roller skating, Weight training, Billiards,  Volley Ball and Chess.